Publications
2020
Translational study of the whole transcriptome in rats and genetic polymorphisms in humans identifies LRP1B and VPS13A as key genes involved in tolerance to cocaine-induced motor disturbances
Vorspan F, Icick R, Mekdad N, Courtin C, Bloch V, Bellivier F, Laplanche JL, Prince N, Pishalin D, Firmo C, Blugeon C, Mégarbane B, Marie-Claire C, Benturquia N
|
Journal : Transl Psychiatry |
Pages : 381 |
Issue : 1 |
Volume : 10 |
The impact of transposable elements on tomato diversity
Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez‑Gómez JM, Colot V, Quadrana L
|
Journal : Nat Commun. |
Pages : 4058 |
Issue : 1 |
Volume : 11 |
Type 2 diabetes is associated with impaired jejunal enteroendocrine GLP-1 cell lineage in human obesity
Osinski C, Le Gléau L, Poitou C, de Toro-Martin J, Genser L, Fradet M, Soula HA, Leturque A, Blugeon C, Jourdren L, Hubert EL, Clément K, Serradas P, Ribeiro A
|
Journal : Int J Obes (Lond) |
Pages : |
Issue : |
Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion.
Drareni K, Ballaire R, Alzaid F, Goncalves A, Chollet C, Barilla S, Nguewa JL, Dias K, Lemoine S, Riveline JP, Roussel R, Dalmas E, Velho G, Treuter E, Gautier JF, Venteclef N
|
Journal : Cell Rep. |
Pages : 108141 |
Issue : 11 |
Volume : 32 |
Local Translation in Perisynaptic Astrocytic Processes Is Specific and Changes after Fear Conditioning.
Mazaré N, Oudart M, Moulard J, Cheung G, Tortuyaux R, Mailly P, Mazaud D, Bemelmans AP, Boulay AC, Blugeon C, Jourdren L, Le Crom S, Rouach N, Cohen‑Salmon M
|
Journal : Cell Rep. |
Pages : 108076 |
Issue : 8 |
Volume : 32 |
Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection
Nguyen Quang N, Goudey S, Ségéral E, Mohammad A, Lemoine S, Blugeon C, Versapuech M, Paillart JC, Berlioz‑Torrent C, Emiliani S, Gallois‑Montbrun S
|
Journal : Retrovirology |
Pages : 25 |
Issue : 17 |
Volume : 1 |
Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling through upregulation of ATP binding cassette subfamily G member 1
Barilla S, Liang N, Mileti E, Ballaire R, Lhomme M, Ponnaiah M, Lemoine S, Soprani A, Gautier JF, Amri EZ, Le Goff W, Venteclef N, Treuter E
|
Journal : Mol Metab |
Pages : 101066 |
Issue : |
Volume : 13 |
Aire-dependent genes undergo Clp1-mediated 3'UTR shortening associated with higher transcript stability in the thymus
Guyon C, Jmari N, Padonou F, Li YC, Ucar O, Fujikado N, Coulpier F, Blanchet C, Root DE, Giraud M
|
Journal : Elife |
Pages : |
Issue : Apr 29 |
Volume : 9 |
Distinctive Cellular and Metabolic Reprogramming in Porcine Lung Mononuclear Phagocytes Infected With Type 1 PRRSV Strains
Crisci E, Moroldo M, Vu Manh TP, Mohammad A, Jourdren L, Urien C, Bouguyon E, Bordet E, Bevilacqua C, Bourge M, Pezant J, Pléau A, Boulesteix O, Schwartz I, Bertho N, Giuffra E.
|
Journal : Front Immunol. |
Pages : 588411 |
Issue : |
Volume : 11 |
Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
Pirayre A, Duval L, Blugeon C, Firmo C, Perrin S, Jourdier E, Margeot A, Bidard F
|
Journal : BMC Genomics |
Pages : 855 |
Issue : 21 |
Volume : 1 |
2019
Lipid markers and related transcripts during excitotoxic neurodegeneration in kainate-treated mice
Chali F, Milior G, Marty S, Morin-Brureau M, Le Duigou C, Savary E, Blugeon C, Jourdren L, Miles R
|
Journal : European Journal of Neuroscience |
Pages : 1759-1778 |
Issue : 1 |
Volume : 50 |
Unravelling the genes forming the wing pattern supergene in the polymorphic butterfly Heliconius numata
Saenko SV, Chouteau M, Piron-Prunier F, Blugeon C, Joron M, Llaurens V
|
Journal : EvoDevo |
Pages : 16 |
Issue : 10 |
Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination
Fiorucci AS, Bourbousse C, Concia L, Rougée M, Deton-Cabanillas AF, Zabulon G, Layat E, Latrasse D, Kim SK, Chaumont N, Lombard B, Stroebel D, Lemoine S, Mohammad A, Blugeon C, Loew D, Bailly C, Bowler C, Benhamed M, Barneche F
|
Journal : Genome Biology |
Pages : 100 |
Issue : 20 |
Opposite T3 Response of ACTG1-FOS Subnetwork Differentiate Tailfin Fate in Xenopus Tadpole and Post-hatching Axolotl
Kerdivel G, Blugeon C, Fund C, Rigolet M, Sachs LM, Buisine N
|
Journal : Frontiers in Endocrinology |
Pages : 194 |
Issue : |
Volume : 10 |
Exon junction complex components Y14 and Mago still play a role in budding yeast
Boisramé A, Devillers H, Onésime D, Brunel F, Pouch J, Piot M, Neuvéglise C
|
Journal : Scientific Reports |
Pages : 849 |
Issue : |
Molecular characterisation of a cellular conveyor belt in Clytia medusa
Condamine T, Jager M, Leclère L, Blugeon C, Lemoine S, Copley RR, Manuel M
|
Journal : Developmental Biology |
Pages : 30409-30413 |
Issue : |
Volume : 18 |
Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling
Garcia-Diaz B, Bachelin C, Coulpier F, Gerschenfeld G, Deboux C, Zujovic V, Charnay P, Topilko P, Baron-Van Evercooren A
|
Journal : Acta Neuropathologica |
Pages : 457-476 |
Issue : 138 |
Volume : 3 |
Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice
Hasna J, Bohic S, Lemoine S, Blugeon C, Bouron A
|
Journal : Molecular Neurobiology |
Pages : 6928-6940 |
Issue : 10 |
Volume : 56 |
Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes
Almonacid M, Al Jord A, El-Hayek S, Othmani A, Coulpier F, Lemoine S, Miyamoto K, Grosse R, Klein C, Piolot T, Mailly P, Voituriez R, Genovesio A, Verlhac MH
|
Journal : Developmental Cell |
Pages : 145-157 |
Issue : 2 |
Volume : 51 |
2018
Microglial phenotypes in the human epileptic temporal lobe
Morin-Brureau M, Milior G, Royer J, Chali F, LeDuigou C, Savary E, Blugeon C, Jourdren L, Akbar D, Dupont S, Navarro V, Baulac M, Bielle F, Mathon B, Clemenceau S, Miles R
|
Journal : Brain. |
Pages : 3343-3360 |
Issue : 141 |
Volume : 12 |
Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells
Radomska KJ, Coulpier F, Gresset A, Schmitt A, Debbiche A, Lemoine S, Wolkenstein P, Vallat JM, Charnay P, Topilko P
|
Journal : Cancer Discoveery |
Pages : 130-147 |
Issue : 1 |
Volume : 9 |
Non-cell Autonomous OTX2 Homeoprotein Regulates Visual Cortex Plasticity Through Gadd45b/g
Apulei J, Kim N, Testa D, Ribot J, Morizet D, Bernard C, Jourdren L, Blugeon C, Di Nardo AA, Prochiantz A
|
Journal : Cereb Cortex |
Pages : 2384–2395 |
Issue : 6 |
Volume : 29 |
Active intermixing of indirect and direct neurons builds the striatal mosaic
Tinterri A, Menardy F, Diana MA, Lokmane L, Keita M, Coulpier F, Lemoine S, Mailhes C, Mathieu B, Merchan-Sala P, Campbell K, Gyory I, Grosschedl R, Popa D, Garel S
|
Journal : Nat Commun. |
Pages : 4725 |
Issue : 9 |
Dual-layer transposon repression in heads of Drosophila melanogaster
van den Beek M, da Silva B, Pouch J, Ali Chaouche MEA, Carré C, Antoniewski C
|
Journal : RNA |
Pages : 1749-1760 |
Issue : |
Volume : 12 |
Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions
Wu X, Kabalane H, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer-Satta V, Arneodo A, Audit B, Hyrien O
|
Journal : Nucleic Acids Res. |
Pages : 10157–10172 |
Issue : 19 |
Volume : 46 |
Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype
Boulay AC, Gilbert A, Oliveira Moreira V, Blugeon C, Perrin S, Pouch J, Le Crom S, Ducos B, Cohen‑Salmon M
|
Journal : Brain Sci. |
Pages : |
Issue : 4 |
Volume : 8 |
Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner
Thion MS, Low D, Silvin A, Chen J, Grisel P, Schulte-Schrepping J, Blecher R, Ulas T, Squarzoni P, Hoeffel G, Coulpier F, Siopi E, David FS, Scholz C, Shihui F, Lum J, Amoyo AA, Larbi A, Poidinger M, Buttgereit A, Lledo PM, Greter M, Chan JKY, Amit I, Beyer M, Schultze JL, Schlitzer A, Pettersson S, Ginhoux F, Garel S
|
Journal : Cell |
Pages : 500-516 |
Issue : 3 |
Volume : 172 |
Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata
Benchouaia M, Ripoche H, Sissoko M, Thiébaut A, Merhej J, Delaveau T, Fasseu L, Benaissa S, Lorieux G, Jourdren L, Le Crom S, Lelandais G, Corel E, Devaux F
|
Journal : Front Microbiol. |
Pages : 2689 |
Issue : |
Volume : 9 |
Cyclin G and the Polycomb Repressive Complexes PRC1 and PR-DUB cooperate for developmental stability
Dardalhon-Cuménal D, Deraze J, Dupont CA, Ribeiro V, Coléno-Costes A, Pouch J, Le Crom S, Thomassin H, Debat V, Randsholt NB, Peronnet F
|
Journal : PLOS Genetics |
Pages : |
Issue : 14 |
Volume : 7 |
Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain
Chasseigneaux S, Moraca Y, Cochois-Guégan V, Boulay AC, Gilbert A, Le Crom S, Blugeon C, Firmo C, Cisternino S, Laplanche JL, Curis E, Declèves X, Saubaméa B
|
Journal : Scientific Reports |
Pages : 12272 |
Issue : |
Volume : 8 |
2017
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms
Bussard A, Corre E, Hubas C, Duvernois-Berthet E, Le Corguillé G, Jourdren L, Coulpier F, Claquin P, Jean Lopez P
|
Journal : Environmental Microbiology |
Pages : 909-925 |
Issue : 3 |
Volume : 19 |
Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin
Bonnet A, Lambert G, Ernest S, Dutrieux FX, Coulpier F, Lemoine S, Lobbardi R, Rosa FM
|
Journal : Developmental Cell |
Pages : 527–541 |
Issue : |
Volume : 42 |
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements
Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas-Chollier M, Noordermeer D, Charnay P, Gilardi-Hebenstreit P
|
Journal : PLoS Genetics |
Pages : e1006903 |
Issue : 7 |
Volume : 13 |
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns
Saudemont B, Popa A, Parmley JL, Rocher V, Blugeon C, Necsulea A, Meyer E, Duret L
|
Journal : Genome Biology |
Pages : 208 |
Issue : 1 |
Volume : 18 |
Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction
Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F
|
Journal : Biotechnology for Biofuels |
Pages : 209 |
Issue : |
Volume : 10 |
Aozan: an automated post-sequencing data-processing pipeline
Perrin S, Firmo C, Lemoine S, Le Crom S, Jourdren L
|
Journal : Bioinformatics |
Pages : 2212–2213 |
Issue : 33 |
Volume : 14 |
Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface
Boulay AC, Saubaméa B, Adam N, Chasseigneaux S, Mazaré N, Gilbert A, Bahin M, Bastianelli L, Blugeon C, Perrin S, Pouch J, Ducos B, Le Crom S, Genovesio A, Chrétien F, Declèves X, Laplanche JL, Cohen-Salmon M
|
Journal : Cell Discovery |
Pages : 17005 |
Issue : |
Volume : 3 |
Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice
Milet C, Bléher M, Allbright K, Orgeur M, Coulpier F, Duprez D, Havis E
|
Journal : Scientific Reports |
Pages : 16153 |
Issue : 1 |
Volume : 7 |
2016
ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses
Lelandais G, Blugeon C, Merhej J
|
Journal : Methods in Molecular Biology |
Pages : 185-202 |
Issue : |
Volume : 1361 |
Molecular signatures of neural connectivity in the olfactory cortex
Diodato A, Ruinart de Brimont M, Yim YS, Derian N, Perrin S, Pouch J, Klatzmann D, Garel S, Choi GB, Fleischmann A
|
Journal : Nature Communications |
Pages : |
Issue : 7 |
Volume : 12238 |
IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans
Alzaid F, Lagadec F, Albuquerque M, Ballaire R, Orliaguet L, Hainault I, Blugeon C, Lemoine S, Lehuen A, Saliba DG, Udalova IA, Paradis V, Foufelle F, Venteclef N
|
Journal : JCI Insight |
Pages : e88689 |
Issue : 1 |
Volume : 20 |
A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Merhej J, Thiebaut A, Blugeon C, Pouch J, Ali Chaouche Mel A, Camadro JM, Le
Crom S, Lelandais G, Devaux F
|
Journal : Frontiers in Microbiology |
Pages : |
Issue : 7 |
Volume : 645 |
2015
Boundary Caps Give Rise to Neurogenic Stem Cells and Terminal Glia in the Skin
Gresset A, Coulpier F, Gerschenfeld G, Jourdon A, Matesic G, Richard L, Vallat JM, Charnay P, Topilko P
|
Journal : Stem Cell Reports |
Pages : 1-13 |
Issue : |
Volume : 5 |
The Sarcoglycan complex is expressed in the cerebrovascular system and is specifically regulated by astroglial Cx30 channels
Boulay AC, Saubaméa B, Cisternino S, Mignon V, Mazeraud A, Jourdren L, Blugeon C, Cohen-Salmon M
|
Journal : Frontiers in Cellular Neuroscience |
Pages : 1-9 |
Issue : 9 |
Volume : 9 |
The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei
Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, Herold S, Seidl-Seiboth V, Seiboth B, Espeso EA, Margeot A, Kubicek CP
|
Journal : Molecular Microbiology |
Pages : 405-418 |
Issue : 2 |
Volume : 96 |
Immune quiescence of the brain is set by astroglial connexin 43
Boulay AC, Mazeraud A, Cisternino S, Saubaméa B, Mailly P, Jourdren L, Blugeon C, Mignon V, Smirnova M, Cavallo A, Ezan P, Avé P, Dingli F, Loew D, Vieira P, Chrétien F, Cohen-Salmon M
|
Journal : Journal of Neurosciences |
Pages : 4427-4439 |
Issue : 10 |
Volume : 35 |
Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev IV, Baker SE, Margeot A, Seiboth B, Kubicek CP
|
Journal : BMC Genomics |
Pages : 326 |
Issue : 1 |
Volume : 16 |
Control of plasma membrane permeability by ABC transporters
Khakhina S, Johnson SS, Manoharlal R, Russo SB, Blugeon C, Lemoine S, Sunshine AB, Dunham M, Cowart LA, Devaux F, Moye-Rowley WS
|
Journal : Eukaryotic Cell |
Pages : 442-453 |
Issue : 5 |
Volume : 14 |
Primary and secondary siRNA synthesis triggered by RNAs from food bacteria in the ciliate Paramecium tetraurelia
Carradec Q, Götz U, Arnaiz O, Pouch J, Simon M, Meyer E, Marker S
|
Journal : Nucleic Acids Research |
Pages : 1818-1833 |
Issue : 3 |
Volume : 43 |
Combined transcriptome studies identify AFF3 as a mediator of the oncogenic effects of β-catenin in adrenocortical carcinoma
Lefèvre L, Omeiri H, Drougat L, Hantel C, Giraud M, Val P, Rodriguez S, Perlemoine K, Blugeon C, Beuschlein F, de Reyniès A, Rizk-Rabin M, Bertherat J, Ragazzon B
|
Journal : Oncogenesis |
Pages : e161 |
Issue : |
Volume : 4 |
2014
Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae
Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S
|
Journal : PLoS One |
Pages : e111589 |
Issue : 11 |
Volume : 9 |
Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain
Poggi-Parodi D, Bidard F, Pirayre A, Portnoy T, Blugeon C, Seiboth B, Kubicek CP, Le Crom S, Margeot A
|
Journal : Biotechnology for Biofuels |
Pages : 173 |
Issue : 1 |
Volume : 7 |
Genome-defence small RNAs exalted for epigenetic mating-type inheritance
Singh DP, Saudemont B, Guglielmi G, Arnaiz O, Goût JF, Prajer M, Potekhin A, Przybòs E, Aubusson-Fleury A, Bhullar S, Bouhouche K, Lhuillier-Akakpo M, Tanty V, Blugeon C, Alberti A, Labadie K, Aury JM, Sperling L, Duharcourt S, Meyer E
|
Journal : Nature |
Pages : 447-452 |
Issue : 7501 |
Volume : 509 |
bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes
Merhej J, Frigo A, Le Crom S, Camadro JM, Devaux F, Lelandais G
|
Journal : Yeast |
Pages : 375-391 |
Issue : 10 |
Volume : 31 |
Loss of Krox20 results in aortic valve regurgitation and impaired transcriptional activation of fibrillar collagen genes
Odelin G, Faure E, Kober F, Maurel-Zaffran C, Théron A, Coulpier F, Guillet B, Bernard M, Avierinos JF, Charnay P, Topilko P, Zaffran S
|
Journal : Cardiovasular research |
Pages : 443-455 |
Issue : 3 |
Volume : 104 |
2013
High-frequency promoter firing links THO complex function to heavy chromatin formation
Mouaikel J, Causse SZ, Rougemaille M, Daubenton-Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D
|
Journal : Cell Reports |
Pages : 1082–1094 |
Issue : 4 |
Volume : 5 |
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O\\'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen A, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L
|
Journal : Nature Communications |
Pages : 2091 |
Issue : 0 |
Volume : 4 |
Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism
Atanasova L, Le Crom S, Gruber S, Coulpier F, Seidl-Seiboth V, Kubicek CP, Druzhinina IS
|
Journal : BMC Genomics |
Pages : 121 |
Issue : 1 |
Volume : 14 |
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F; French StatOmique Consortium
|
Journal : Briefings in Bioinformatics |
Pages : 671-683 |
Issue : 6 |
Volume : 14 |
2012
RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans
Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée JY, Le Crom S, Prasad R, Devaux F
|
Journal : BMC Genomics |
Pages : 396 |
Issue : 1 |
Volume : 13 |
Cthrc1 is a negative regulator of myelination in Schwann cells
Apra C, Richard L, Coulpier F, Blugeon C, Gilardi-Hebenstreit P, Vallat JM, Lindner V, Charnay P, Decker L
|
Journal : Glia |
Pages : 393-403 |
Issue : 3 |
Volume : 60 |
Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress
Servant G, Pinson B, Tchalikian-Cosson A, Coulpier F, Lemoine S, Pennetier C, Bridier-Nahmias A, Todeschini AL, Fayol H, Daignan-Fornier B, Lesage P
|
Journal : Nucleic Acids Res |
Pages : 5271-5282 |
Issue : 12 |
Volume : 40 |
New partners in regulation of gene expression: the enhancer of trithorax and polycomb corto interacts with methylated ribosomal protein l12 via its chromodomain
Coléno-Costes A, Jang SM, de Vanssay A, Rougeot J, Bouceba T, Randsholt NB, Gibert JM, Le Crom S, Mouchel-Vielh E, Bloyer S, Peronnet F
|
Journal : PLoS Genetics |
Pages : e1003006 |
Issue : 10 |
Volume : 8 |
Eoulsan: A Cloud Computing-Based Framework Facilitating High Throughput Sequencing Analyses
Jourdren L, Bernard M, Dillies MA, Le Crom S
|
Journal : Bioinformatics |
Pages : 1542-1543 |
Issue : 11 |
Volume : 28 |
In Vitro Effect of Malachite Green on Candida albicans Involves Multiple Pathways and Transcriptional Regulators UPC2 and STP2
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AH, Singh A, Blugeon C, Sanglard D, Prasad R
|
Journal : Antimicrobial Agents and Chemotherapy |
Pages : 495-506 |
Issue : 1 |
Volume : 56 |
2011
Physiological and Toxic Effects of Purine Intermediate 5-Amino-4-imidazolecarboxamide Ribonucleotide (AICAR) in Yeast
Hürlimann HC, Laloo B, Simon-Kayser B, Saint-Marc C, Coulpier F, Lemoine S, Daignan-Fornier B, Pinson B
|
Journal : The Journal of Biological Chemistry |
Pages : 30994-31002 |
Issue : 35 |
Volume : 286 |
Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase
Portnoy T, Margeot A, Seidl-Seiboth V, Le Crom S, Ben Chaabane F, Linke R, Seiboth B, Kubicek CP
|
Journal : Eukaryot Cell |
Pages : 262-271 |
Issue : 2 |
Volume : 10 |
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Doehren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gomez-Rodriguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernandez-Onate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lubeck M, Lubeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV
|
Journal : Genome Biology |
Pages : R40 |
Issue : 4 |
Volume : 18 |
The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation
Portnoy T, Margeot A, Linke R, Atanasova L, Fekete E, Sandor E, Hartl L, Karaffa L, Druzhinina IS, Seiboth B, Le Crom S, Kubicek CP
|
Journal : BMC Genomics |
Pages : 269 |
Issue : 1 |
Volume : 12 |
Boundary cap cells are peripheral nervous system stem cells that can be redirected into central nervous system lineages
Zujovic V, Thibaud J, Bachelin C, Vidal M, Deboux C, Coulpier F, Stadler N, Charnay P, Topilko P, Baron-Van Evercooren A
|
Journal : Proceedings of The National Academy of Sciences of the United States of America |
Pages : 10714-10719 |
Issue : 26 |
Volume : 108 |
Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae
Jung PP, Fritsch ES, Blugeon C, Souciet JL, Potier S, Lemoine S, Schacherer J, de Montigny J
|
Journal : BMC Genomics |
Pages : 331 |
Issue : 1 |
Volume : 12 |
Dok4 is involved in Schwann cell myelination and axonal interaction in vitro
Blugeon C, Le Crom S, Richard L, Vallat JM, Charnay P, Decker L
|
Journal : Glia |
Pages : 351-362 |
Issue : 3 |
Volume : 59 |
Krox20 inactivation in the PNS leads to CNS/PNS boundary transgression by central glia
Coulpier F, Decker L, Funalot B, Vallat JM, Garcia-Bragado F, Charnay P, Topilko P
|
Journal : Rev Neurol (Paris) |
Pages : 51-56 |
Issue : 1 |
Volume : 167 |
Secreted amyloid precursor protein β and secreted amyloid precursor protein α induce axon outgrowth in vitro through Egr1 signaling pathway
Chasseigneaux S, Dinc L, Rose C, Chabret C, Coulpier F, Topilko P, Mauger G, Allinquant B
|
Journal : PLoS One |
Pages : e16301 |
Issue : 1 |
Volume : 6 |
2010
CNS/PNS Boundary Transgression by Central Glia in the Absence of Schwann Cells or Krox20/Egr2 Function
Coulpier F, Decker F, Funalot B, Vallat JM, Garcia-Bragado F, Charnay P, Topilko P
|
Journal : The Journal of Neuroscience |
Pages : 5958-5967 |
Issue : 17 |
Volume : 30 |
Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments
Jourdren L, Duclos A, Brion C, Portnoy T, Mathis H, Margeot A, Le Crom S
|
Journal : Nucleic Acids Res. |
Pages : e117 |
Issue : 10 |
Volume : 38 |
Boundary Cap Cells are Highly Competitive for CNS Remyelination: Fast Migration and Efficient Differentiation in PNS and CNS Myelin-Forming Cells
Zujovic V, Thibaud J, Bachelin C, Vidal M, Coulpier F, Charnay P, Topilko P, Baron-Van Evercooren A
|
Journal : Stem Cells |
Pages : 470-479 |
Issue : 3 |
Volume : 28 |
A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, Xuan Z, Zhang MQ, Sedel F, Jourdren L, Coulpier F, Triller A, Spector DL, Bessis A
|
Journal : EMBO J |
Pages : 3082-3093 |
Issue : 18 |
Volume : 29 |
CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses
Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M
|
Journal : RNA |
Pages : 1301-1307 |
Issue : 7 |
Volume : 16 |
2009
Novel features of boundary cap cells revealed by the analysis of newly identified molecular markers
Coulpier F, Le Crom S, Maro GS, Manent J, Giovannini M, Maciorowski Z, Fischer A, Gessler M, Charnay P, Topilko P
|
Journal : Glia |
Pages : 1450-1457 |
Issue : 13 |
Volume : 57 |
Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways
Pinson B, Vaur S, Sagot I, Coulpier F, Lemoine S, Daignan-Fornier B
|
Journal : Genes and development |
Pages : 1399-1407 |
Issue : 12 |
Volume : 23 |
Phenotypic Consequences of Purine Nucleotide Imbalance in Saccharomyces cerevisiae
Saint-Marc C, Pinson B, Coulpier F, Jourdren L, Lisova O, Daignan-Fornier B
|
Journal : Genetics |
Pages : 529-538 |
Issue : 2 |
Volume : 183 |
An evaluation of custom microarray applications: the oligonucleotide design challenge
Lemoine S, Combes F, Le Crom S
|
Journal : Nucleic Acids Research |
Pages : 1726–1739 |
Issue : 6 |
Volume : 37 |
Genome-Wide Transcriptome Analyses of Silicon Metabolism in Phaeodactylum tricornutum Reveal the Multilevel Regulation of Silicic Acid Transporters
Sapriel G, Quinet M, Heijde M, Jourdren L, Tanty V, Luo G, Le Crom S, Lopez PJ
|
Journal : PLoS ONE |
Pages : e7458 |
Issue : 4 |
Volume : 10 |
Selection of oligonucleotides for whole-genome microarrays with semi-automatic update
Golfier G, Lemoine S, van Miltenberg A, Bendjoudi A, Rossier J, Le Crom S, Potier MC
|
Journal : Bioinformatics |
Pages : 128-129 |
Issue : 1 |
Volume : 25 |
Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
Le Crom S, Schackwitz W, Pennacchio P, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis S, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A
|
Journal : Proceedings of The National Academy of Sciences of the United States of America |
Pages : 16151-16156 |
Issue : 38 |
Volume : 106 |
2008
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata
Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F
|
Journal : Genome Biology |
Pages : R164 |
Issue : 11 |
Volume : 9 |
Lethal accumulation of guanylic nucleotides in Saccharomyces cerevisiae HPT1-deregulated mutants
Breton A, Pinson B, Coulpier F, Giraud MF, Dautant A, Daignan-Fornier B
|
Journal : Genetics |
Pages : 815-824 |
Issue : 2 |
Volume : 178 |
Identification of Phox2b-regulated genes by expression profiling of cranial motoneuron precursors
Pla P, Hirsch MR, Le Crom S, Reiprich S, Harley VR, Goridis C
|
Journal : Neural development |
Pages : 1-16 |
Issue : 14 |
Volume : 3 |
Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization
Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C
|
Journal : PLoS ONE |
Pages : e2293 |
Issue : 6 |
Volume : 3 |
Structure and properties of transcriptional networks driving selenite stress response in yeasts
Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F
|
Journal : BMC Genomics |
Pages : 333 |
Issue : Jul 15 |
Volume : 9 |
THO/Sub2p functions to coordinate 3\\'-end processing with gene-nuclear pore association
Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RK, Lemoine S, Blugeon C, Boulay J, Jensen TH, Stutz F, Devaux F, Libri D
|
Journal : Cell |
Pages : 308-321 |
Issue : 2 |
Volume : 135 |
Co-regulation of yeast purine and phosphate pathways in response to adenylic nucleotide variations
Gauthier S, Coulpier F, Jourdren L, Merle M, Beck S, Konrad M, Daignan-Fornier B, Pinson B
|
Journal : Molecular Microbiology |
Pages : 1583-1594 |
Issue : 6 |
Volume : 68 |
2007
The Central Role of PDR1 in the Foundation of Yeast Drug Resistance
Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F
|
Journal : J Biol Chem |
Pages : 5063-5074 |
Issue : 7 |
Volume : 282 |
Mitochondria-associated Yeast mRNAs and the Biogenesis of Molecular Complexes
Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C
|
Journal : Molecular Biology of the Cell |
Pages : 362-368 |
Issue : 2 |
Volume : 18 |
2006
Role of heat-shock factor 2 in cerebral cortex formation and as a regulator of p35 expression
Chang Y, Ostling P, Akerfelt M, Trouillet D, Rallu M, Gitton Y, El Fatimy R, Fardeau V, Le Crom S, Morange M, Sistonen L, Mezger V
|
Journal : Genes & Development |
Pages : 836-847 |
Issue : 7 |
Volume : 20 |
Goulphar: rapid access and expertise for standard two-color microarray normalization methods
Lemoine S, Combes F, Servant N, Le Crom S
|
Journal : BMC Bioinformatics |
Pages : 467 |
Issue : |
Volume : 7 |
2005
Doelan: a solution for quality control monitoring of microarray production
Jourdren L, Le Crom S
|
Journal : Bioinformatics |
Pages : 4194-495 |
Issue : 22 |
Volume : 21 |
Transcriptional regulation by Lge1p requires a function independent of its role in histone H2B ubiquitination
Zhang X, Kolaczkowska A, Devaux F, Panwar SL, Hallstrom TC, Jacq C, Moye-Rowley WS
|
Journal : J Biol Chem |
Pages : 2759-70 |
Issue : 4 |
Volume : 280 |
Early expression of yeast genes affected by chemical stress
Lucau-Danila A, Lelandais G, Kozovska Z, Tanty V, Delaveau T, Devaux F, Jacq C
|
Journal : Mol Cell Biol. |
Pages : 1860-8 |
Issue : 5 |
Volume : 25 |
2004
Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae
Paiva S, Devaux F, Barbosa S, Jacq C, Casal M
|
Journal : Yeast |
Pages : 201-210 |
Issue : Issue 3 (Feb) |
Volume : 21 |
Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies
Vachova L, Devaux F, Kucerova H, Ricicova M, Jacq C, Palkova Z
|
Journal : J Biol Chem. |
Pages : 37973-81 |
Issue : 36 |
Volume : 279 |
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Lelandais G, Marc P, Vincens P, Jacq C, Vialette S
|
Journal : BMC Bioinformatics |
Pages : 20 |
Issue : 1 |
Volume : 5 |
yMGV: a cross-species expression data mining tool
Lelandais G, Le Crom S, Devaux F, Vialette S, Church GM, Jacq C, Marc P
|
Journal : Nucleic Acids Research |
Pages : D323-325 |
Issue : Database issue |
Volume : 32 |
2003
Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon
Lucau-Danila A, Delaveau T, Lelandais G, Devaux F, Jacq C
|
Journal : Journal of Biological Chemistry |
Pages : 52641-52650 |
Issue : 52 |
Volume : 278 |
Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology
Kuthan M, Devaux F, Janderova B, Slaninova I, Jacq C, Palkova Z
|
Journal : Molecular Microbiology |
Pages : 745-754 |
Issue : 3 |
Volume : 47 |
A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast
Hikkel I, Lucau-Danila A, Delaveau T, Marc P, Devaux F, Jacq C
|
Journal : Journal of Biological Chemistry |
Pages : 11427-11432 |
Issue : 13 |
Volume : 278 |
Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast
Ganem C, Devaux F, Torchet C, Jacq C, Quevillon-Cheruel S, Labesse G, Facca C, Faye G
|
Journal : EMBO Journal |
Pages : 1588-1598 |
Issue : issue 7 (Apr 1) |
Volume : 22 |
2002
New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system
Le Crom S, Devaux F, Marc P, Zhang X, Moye-Rowley WS, Jacq C
|
Journal : Molecular and Cellular Biology |
Pages : 2642-2649 |
Issue : 8 |
Volume : 22 |
yMGV: helping biologists with yeast microarray data mining
Le Crom S, Devaux F, Jacq C, Marc P
|
Journal : Nucleic Acids Research |
Pages : 76-79 |
Issue : 1 |
Volume : 30 |
Genome-wide analysis of mRNAs targeted to yeast mitochondria
Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, Jacq C
|
Journal : EMBO Reports |
Pages : 159-164 |
Issue : 2 |
Volume : 3 |
Ammonia pulses and metabolic oscillations guide yeast colony development
Palkova Z, Devaux F, Icicova M, Minarikova L, Le Crom S, Jacq C
|
Journal : Molecular Biology of the Cell |
Pages : 3901-3914 |
Issue : 11 |
Volume : 13 |
Arrayplot for visualization and normalization of cDNA microarray data
Marc P, Jacq C
|
Journal : Bioinformatics |
Pages : 888-889 |
Issue : 6 |
Volume : 18 |
Genome-wide studies on the nuclear PDR3-controlled response to mitochondrial dysfunction in yeast
Devaux F, Carvajal E, Moye-Rowley S, Jacq C
|
Journal : FEBS Letters |
Pages : 25-28 |
Issue : 1-3 |
Volume : 515 |
2001
yMGV: a database for visualization and data mining of published genome-wide yeast expression data
Marc P, Devaux F, Jacq C
|
Journal : Nucleic Acids Research |
Pages : E63 |
Issue : 13 |
Volume : 29 |
An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor
Devaux F, Marc P, Bouchoux C, Delaveau T, Hikkel I, Potier MC, Jacq C
|
Journal : EMBO Reports |
Pages : 493-498 |
Issue : 6 |
Volume : 2 |
Transcriptomes, transcription activators and microarrays
Devaux F, Marc P, Jacq C
|
Journal : FEBS Letter |
Pages : 140-144 |
Issue : 2-3 |
Volume : 498 |